Chatterjee A, Rodger EJ, Ahn A, Stockwell PA, Parry MP, Motwani J, Gallagher S, Shklovskaya E, Jessamy T, Eccles MR, Hersey P: Marked global DNA hypomethylation is associated with constitutive PD-L1 expression in melanoma, iScience (Cell Press). 2018 [IF= Due, Cell Press Flagship journal of high impact, national and international media highlights)]
Eccles MR, Chatterjee A, Rodger EJ: Identifying drivers of metastasis; towards a systematic approach, Translational Cancer Research. 7(6), October 2017. [IF= 1.2, Rank= Q2-Radiology, 123/287)]
Chatterjee A, Rodger EJ, Eccles MR: Epigenetics drivers of cancer metastasis. Seminars in cancer biology, August 2017 [IF= 9.96, Rank= Q1-Cancer research, 5/198)]
Macaulay E, Chatterjee A, Cheng X, Baguley BC, Eccles MR, Morison IM: The genes of life and death: a potential role for placental-specific genes in cancer. BioEssay. 39 (11), November, 2017 [IF= 4.73, Rank= Q1-Biochemisty, Genetics and Molecular Biology, 19/225)].
Ludgate JL, Wright J, Stockwell PA, Morison IM, Eccles MR, Chatterjee A: A streamlined method for analysing genome-wide DNA methylation patterns from low amounts of FFPE DNA. BMC Medical Genomics, 2017 [IF= 3.77, Rank= Q1-Genetics,77/310)].
Chatterjee A, Ahn A, Rodger EJ, Stockwell PA, Eccles MR: A bench scientist’s guide for designing and analysing RNA-Seq data. Methods in Molecular Biology, May 2018 [IF=NA, Invited paper].
Ahn A, Chatterjee A, Eccles MR: The slow cycling phenotype: a growing problem for treatment resistance in melanoma. Molecular Cancer Therapeutics.16(6):1002-1009, June 2017 [IF=5.77, Rank= Q1-Oncology, 20/322].
Chatterjee A, Macaulay EC, Ahn A, Ludgate JL, Stockwell PA, Weeks RJ, Parry MF, Foster TJ, Knarston IM, Eccles MR, Morison IM: Comparative assessment of DNA methylation patterns between RRBS and Sequenom EpiTyper methylation analysis. Epigenomics. May, 2017 [IF=4.51, Rank= Q1-Genetics and Heredity, 31/166].
Rajendiran A, Chatterjee A, Pan A: Computational approaches and related tools to identify microRNAs in a species: A bird's eye view. Interdisciplinary Sciences: Computational Life Sciences (Springer), March 2017 [IF= 0.85, Rank= Q2-Health Informatics, 38/122)]
Rodger EJ and Chatterjee A: The epigenomic basis of common diseases. Clinical Epigenetics. 9(1). January 2017 [IF=4.33, Rank= Q1-Genetics, 46/310].
Leichter AL, Sullivan MJ, Eccles MR, Chatterjee A: MicroRNA expression patterns and signalling pathways in the development and progression of childhood solid tumours. Molecular Cancer. 16(1). January 2017 [IF=5.89, Rank= Q1-Oncology, 25/322).
Chatterjee A, Rodger EJ, Morison IM, Eccles MR, Stockwell PA: Tools and Strategies for analysis of genome-wide and gene-specific DNA methylation patterns. Methods in Molecular Biology, 2017. 1537: 249-277. [Invited paper]
Chatterjee A, Rodger EJ, Stockwell PA, Le Mée G, Morison IM: Generating Multiple Base-resolution DNA Methylomes Using Reduced Representation Bisulfite Sequencing. Methods in Molecular Biology, 2017, 1537: 279-298 [Invited paper].
Chatterjee A, Stockwell PA, Ahn A, Rodger EJ, Leichter AL, Eccles MR: Genome- wide methylation sequencing of paired primary and metastatic cell lines identifies common DNA methylation changes and a role for EBF3 as a candidate epigenetic driver in melanoma metastasis. Oncotarget. December 2016 [IF=5.1, Rank= Q1-Oncology, 35/322, national and international media coverage for this paper].
Chatterjee A# Stockwell PA#, Stockwell PA, Rodger EJ, Parry MF, Eccles MR: scan_tcga tools for integrated epigenomic and transcriptomic analysis of tumour subgroups. Epigenomics. September 2016. #equal contribution. [Cover story in Epigenie, IF=4.04, Rank= Q1-Genetics, 78/310].
Chatterjee A, Lagisz M, Rodger EJ, Zhen L, Stockwell PA, Duncan EJ, Horsfield JA, Jeykani J, Mathavan S, Ozaki Y, Nakagawa S: Sex differences in DNA methylation and expression in zebrafish brain: a test of an extended ‘male sex driver’ hypothesis. Gene (Elsevier) pii: S0378-1119 (16) 30437-1, May 2016. [Cover story in EpiBeat in Zymo, USA, IF= 2. 3, Rank: Q2-Genetics, 151/310].
Jones A, Ferguson P, Gardner J, Rooker S , Sutton T , Ahn A, Chatterjee A, Bickley V, Sarwar M , Emanuel P , Kenwright D , Shepherd P, Eccles MR: NRAS and EPHB6 mutation rates differ in metastatic melanomas of patients in the North Island versus South Island of New Zealand. Oncotarget. May 2016. [IF=5.1, Rank= Q1-Oncology, 35/322, TV one and international media coverage for this paper].
Chatterjee A, Macaulay EC, Rodger EJ, Stockwell PA, Parry MF, Hester RE, Slatter TL, Hung NA, Devenish CJ, Morison IM: Placental hypomethylation is more pronounced in genomic loci devoid of retroelements: G3:Genes|Genomes|Genetics. 2016 Apr 29. pii: g3.116.030379 [I.F=3.2, Rank: Q1-Medicine (miscellaneous), 182/1779].
Chatterjee A, Stockwell PA, Rodger EJ, Morison IM: Genome-scale DNA methylome and transcriptome profiling of human neutrophils. Scientific Data. 2016, 3: 160019 [IF=4.82, Nature publishing journal, highly accessed paper].
Leichter AL, Purcell RV, Sullivan MJ, Eccles MR, Chatterjee A: Multi-platform microRNA profiling of hepatoblastoma patients using formalin fixed paraffin embedded archival samples. GigaScience. 2015, 4:54 [IF=7.46, Rank: Q1- Genetics, in top 5%].
Chatterjee A, Stockwell PA, Rodger EJ, Duncan EJ, Parry MF, Weeks RJ, Morison IM: Genome-wide DNA methylation map of healthy individuals widespread inter-individiual epigenetic variation. Scientific Reports. 2015, 11:17328. [IF=5.6, Q1-Multidisiplinary science, 4/109, Cover story in Epigenie, highly accessed]
Chatterjee A, Eccles MR: DNA methylation and epigenomics: new technologies and emerging concepts. Genome Biology 2015, 16:103. [IF=11.3, Rank= Q1-Genetics, 8/310, permanently flagged as highly accessed paper by Genome Biology].
Chatterjee A, Leichter AL, Fan V, Tsai P, Sullivan M, Purcell R, Eccles MR: A cross comparison of technologies for the detection of microRNAs
in clinical FFPE samples of hepatoblastoma patients. Scientific Reports 2015, 5:10438. [Highly accessed, IF=5.6, Q1-Multidisiplinary science, 4/109]
Chatterjee A, Stockwell PA, Horsfield JA, Morison IM, Nakagawa S: Base- resolution DNA methylation landscape of zebrafish brain and liver. Genomics Data 2014, 2:342-344. [IF=Due, Rank: Q3-Biotechnology, 184/270].
Rodger EJ, Chatterjee A, Morison IM: 5-hydroxymethylcytosine: a Potential Therapeutic Target in Cancer. Epigenomics 2014, 5:503-514. [IF=4.04, Rank= Q1-Genetics, 78/310].
Stockwell PA#, Chatterjee A#, Rodger EJ, Morison IM: DMAP: differential methylation analysis package for RRBS and WGBS data. Bioinformatics 2014, 30:1814-1822.#equal contribution. [IF=5.77, Rank: Q1-Statistics and Probability and also in Biochemistry, 5/179 and 13/396, Cover story in Epigenie]
Chatterjee A, Ozaki Y, Stockwell PA, Horsfield JA, Morison IM, Nakagawa S: Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing. Epigenetics 2013, 8:979-989. [IF=4.7, Rank: Q1-Cancer Research, 23/198, Cover story in Epigenie, best publication award from Dunedin School of Medicine].
Laskar A, Chatterjee A, Chatterjee S, Rodger EJ: Three-Dimensional Molecular Modeling of a Diverse Range of SC Clan Serine Proteases. Molecular Biology International 2012, 2012:580965. . [IF=due]
Chatterjee A: Conference Scene: Epigenetic regulation: from mechanism to intervention. Epigenomics 2012, 4:487-490. [IF=4.04, Rank= Q1-Genetics, 78/310].
Chatterjee A#, Rodger EJ#, Stockwell PA, Weeks RJ, Morison IM: Technical considerations for reduced representation bisulfite sequencing with multiplexed libraries.Journal Of Biomedicine & Biotechnology 2012, 2012:741542. # equal contribution [IF=3.2, Rank: Q2-Biochemistry, Genetics and Molecular Biology, 70/219, Key technical article in Epigenie, Customer success story by Agilent]..
Laskar A, Rodger EJ, Chatterjee A, Mandal C: Modeling and structural analysis of PA clan serine proteases. BMC Research Notes 2012, 5:256. [IF=Due, Rank: Q2- Biochemistry, Genetics and Molecular Biology, 74/219].
Chatterjee A, Stockwell PA, Rodger EJ, Morison IM: Comparison of alignment software for genome-wide bisulphite sequence data. Nucleic Acids Research 2012, 40:e79. [IF=10.2, Rank= Q1-Genetics, 12/310, Editors choice article –Genome web, February 2012. Most read article March, May 2012, NAR].
Chatterjee A, Morison IM: Monozygotic twins: genes are not the destiny? Bioinformation 2011, 7:369-370. [IF=0.80, Rank= 80 out of 207 in Biochemistry, Genetics and Molecular Biology]
Laskar A, Rodger EJ, Chatterjee A, Mandal C: Modeling and structural analysis of evolutionarily diverse S8 family serine proteases. Bioinformation 2011, 7:239-245. [IF=0.80, Rank= 80 out of 207 in Biochemistry, Genetics and Molecular Biology]
Chatterjee A, Basu A: Rubisco: Limitations and re-engineering for a better enzyme. International Research Journal of Plant Science 2011, 2(2):022-024. [Downloaded more than 1000 times: source Research Gate].
Chatterjee A, Pan A: Horizontal Gene Transfer-a Genomic Perspective. Online Journal of BioTechnology Research 2010, 1(4): 167-169.
Laskar A, Mandal CN, Chatterjee A: Protease-Inhibitor Interactions – A structural Insight. International Journal of Biotechnology & Biochemistry 2010, 6(2):231-258.
Basu A, Chatterjee A, Kottalil MD: Helicobacter pylori: revisiting the role of host genetics in susceptibility to infectious diseases. Journal of Computational intelligence and Bioinformatics 2010, 1(3): 1-9.
Laskar A, Chatterjee A: Protease – Revisiting the Types and Potential. Online Journal of Biotechnology Research 2009,1(1): 55-61.
Laskar A, Chatterjee A: Computer aided Molecular Modelling and its implications. Bioinformatics Trends 2009,1(4): 85-92.
Chatterjee, A: St. John’s Wort (Hypericum perforatum): A Review on Pharmacodynamics and Therapeutic Potential. Herbal Tech Industry 2009, 5(5):18- 22. [Appeared in Journal Cover]
Chatterjee A: Bdellovibrio bacteriovorus: Life cycle and potential as a predatory renaissance. Advanced Biotech 2009, VIII (09):27-29. [Appeared in Journal Cover].
Shrivastava R, Sarkar R, Chatterjee A, Khadikar PV: QSAR Studies on the Action of an Algicide from a Cyanobacterium: Oscillatoria laetevirens, on Photosystem II Activity. Advanced Biotech 2009, VIII (09):15-18.
Shrivastava R, Chauhan KU, Sarkar R, Chatterjee A: Observation On The Reaction Rate Kinetics In Cellulosic Paper Waste. Advanced Biotech 2009, VIII (07):21-25.
Chatterjee A, Sarkar R: RNA Interference (RNA i): A novel strategy in health care and crop improvement. Advanced Biotech 2008, VII (3):36-38. [Appeared in Journal Cover].